I do the same thing with my FT232RL's. The issue is, when you grab
the USB device with the FTDI library (or the D2xx library), you grab
the whole device - including the serial port. At that point, you need
to use the libftdi API to see the serial port, not Linux's built-in
tty driver.
Basically, you can't have two drivers talking to the same usb device
at the same time.
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libftdi - see http://www.intra2net.com/en/developer/libftdi for details.
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